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What is a tree sequence?

Tree sequence basics

Terminology & concepts
Getting started with tskit

Statistics and Analysis

Analysing tree sequences
Analysing trees
Incremental algorithms
Counting topologies
Parallelization

Further tskit tutorials

Tables and editing
Simplification
Visualization
Working with Metadata
ARGs as tree sequences

Simulation

Tree sequences and simulation
Do you really need mutations?
Advanced msprime topics
Completing forwards simulations
Building a forward simulator
Advanced forward simulations

Other languages

Tskit and R

Development

Developing new tutorials

Tskit for ...

Tskit for population genetics
Tskit for phylogenetics

Index

By Tskit Developers

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