Nodes page

A node defines a sampled or ancestral sequence represented in an ARG. It is identified by a numerical ID and can be present in many marginal trees.

The interactive top plot visualises the total span on the sequence for each ancestral node over time.

The histogram at the bottom shows the distribution of the length of genome that the nodes span.

Plot controls (sidebar):

• The Node flagscheckbox group The tskit Nodes table includes a bitwise flags column used to store information about a node. For example. a value of 1 indicates that the node is a sample. By using these checkboxes it is possible to select which nodes to include in the node spans plot. based on their flag values.

• The log y-axis checkbox plots node time on log scale.