Index A | C | D | G | H | I | M | N | P | R | S | U A add_mutation_metadata() (in module pyslim) add_mutation_metadata_tables() (in module pyslim) annotate() (in module pyslim) annotate_tables() (in module pyslim) C convert_alleles() (in module pyslim) D default_slim_metadata() (in module pyslim) G generate_nucleotides() (in module pyslim) H has_individual_parents() (in module pyslim) has_vacant_samples() (in module pyslim) I individual_ages() (in module pyslim) individual_ages_at() (in module pyslim) INDIVIDUAL_ALIVE (in module pyslim) INDIVIDUAL_MIGRATED (in module pyslim) individual_parents() (in module pyslim) INDIVIDUAL_REMEMBERED (in module pyslim) INDIVIDUAL_RETAINED (in module pyslim) INDIVIDUAL_TYPE_FEMALE (in module pyslim) INDIVIDUAL_TYPE_HERMAPHRODITE (in module pyslim) INDIVIDUAL_TYPE_MALE (in module pyslim) individuals_alive_at() (in module pyslim) is_current_version() (in module pyslim) M mutation_metadata() (in module pyslim) N next_slim_mutation_id() (in module pyslim) node_is_vacant() (in module pyslim) NODE_IS_VACANT_SAMPLE (in module pyslim) nodes_vacant() (in module pyslim) NUCLEOTIDES (in module pyslim) P population_size() (in module pyslim) R recapitate() (in module pyslim) remove_vacant() (in module pyslim) restore_vacant() (in module pyslim) S set_metadata_schemas() (in module pyslim) set_slim_state() (in module pyslim) set_tree_sequence_metadata() (in module pyslim) slim_individual_metadata_schema() (in module pyslim) slim_node_metadata_schema() (in module pyslim) slim_time() (in module pyslim) slim_tree_sequence_metadata_schema() (in module pyslim) U update() (in module pyslim)