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PySLiM manual

  • Introduction

Getting started

  • Installation

Using pyslim

  • Tutorial
  • Vignette: A spatial simulation
  • Vignette: Following up with more coalescent simulation
  • Vignette: Starting with diversity generated by coalescent simulation
  • Vignette: Parallelizing SLiM simulations in a phylogenetic tree
  • Time units
  • Metadata
  • Migrating from previous versions of pyslim

pyslim reference

  • Python API

Miscellaneous

  • Development
  • Repository
  • Open issue

Index

C | D | G | I | P | R | S | U

C

  • convert_alleles() (in module pyslim)

D

  • default_slim_metadata() (in module pyslim)

G

  • generate_nucleotides() (in module pyslim)

I

  • individual_ages_at() (in module pyslim)
  • individuals_alive_at() (in module pyslim)

P

  • population_size() (in module pyslim)

R

  • recapitate() (in module pyslim)

S

  • slim_time() (in module pyslim)

U

  • update() (in module pyslim)

By Tskit Developers

© Copyright 2021.

pyslim 1.0.4