Citing msprimeΒΆ

If you use msprime in your work, please cite the 2016 PLOS Computational Biology paper:

Jerome Kelleher, Alison M Etheridge and Gilean McVean (2016), Efficient Coalescent Simulation and Genealogical Analysis for Large Sample Sizes, PLOS Comput Biol 12(5): e1004842. doi: 10.1371/journal.pcbi.1004842

Additionally, if you use the Discrete Time Wright Fisher model, please cite the 2020 PLOS Genetics paper:

Dominic Nelson, Jerome Kelleher, Aaron P. Ragsdale, Claudia Moreau, Gil McVean and Simon Gravel (2020), Accounting for long-range correlations in genome-wide simulations of large cohorts, PLOS Genetics 16(5): e1008619. https://doi.org/10.1371/journal.pgen.1008619

Bibtex records:

@article{kelleher2016efficient,
  title={Efficient coalescent simulation and genealogical analysis for large sample sizes},
  author={Kelleher, Jerome and Etheridge, Alison M and McVean, Gilean},
  journal={PLoS computational biology},
  volume={12},
  number={5},
  pages={e1004842},
  year={2016},
  publisher={Public Library of Science}
}

@article{nelson2020accounting,
  title={Accounting for long-range correlations in genome-wide simulations of large cohorts},
  author={Nelson, Dominic and Kelleher, Jerome and Ragsdale, Aaron P and
    Moreau, Claudia and McVean, Gil and Gravel, Simon},
  journal={PLoS genetics},
  volume={16},
  number={5},
  pages={e1008619},
  year={2020},
  publisher={Public Library of Science}
}