tsinfer

Infer a tree sequence from genetic variation data.

https://github.com/tskit-dev/tsinfer
Documentation
Latest release: 0.2.1 4 months and 3 days ago
Python Package

Overview:

Tsinfer is a Python package to infer a tree sequence from large quantities of phased DNA sequence data, for example in a VCF file (see the tutorial for how to convert data from a VCF into a suitable input format).

Contributors: