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Version 0.2.8.dev8

  • Introduction
  • Installation
  • Usage
    • Methods
    • Real data
    • Population size
    • Historical (Ancient) Samples
    • More on priors (old)
  • APIs
    • Python API
    • Command line interface
  • Citation
  • References
  • Changelog

Index

A | B | D | E | I | M | N | P | S | T | V

A

  • add_sampledata_times() (in module tsdate)

B

  • BeliefPropagation (class in tsdate.discrete)
  • build_parameter_grid() (in module tsdate)
  • build_prior_grid() (in module tsdate)

D

  • date() (in module tsdate)
  • DEFAULT_APPROX_PRIOR_SIZE (in module tsdate.prior)

E

  • estimation_methods (in module tsdate.core)
  • ExpectationPropagation (class in tsdate.variational)

I

  • inside_outside() (in module tsdate)

M

  • maximization() (in module tsdate)
  • module
    • tsdate
  • mutation_posteriors() (tsdate.variational.ExpectationPropagation method)

N

  • NODE_IS_HISTORICAL_SAMPLE (in module tsdate)
  • node_posteriors() (tsdate.discrete.BeliefPropagation method)
    • (tsdate.variational.ExpectationPropagation method)
  • NODE_SPLIT_BY_PREPROCESS (in module tsdate)
  • NodeTimeValues (class in tsdate.node_time_class)

P

  • PopulationSizeHistory (class in tsdate.demography)
  • preprocess_ts() (in module tsdate)

S

  • sites_time_from_ts() (in module tsdate)
  • split_disjoint_nodes() (in module tsdate.util)

T

  • tsdate
    • module

V

  • variational_gamma() (in module tsdate)

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