Introduction

This is the manual for tscompare, a set of tools for comparing Ancestral Recombination Graphs (ARGs) that are represented as tree sequences using tskit.

To learn more about tskit:

• The tskit tutorials site provides an introduction to the tree sequence format used by tscompare.

Important

If you use tscompare in your work, please remember to cite it appropriately: see the citations page for details.

Contents

Using tscompare

• Usage
• API Reference
• Citing tscompare
• Changelog