msprime

Simulate genealogical trees and genomic sequence data using population genetic models

https://github.com/tskit-dev/msprime
Documentation
Latest release: 1.0.3 2 weeks ago
Python Package

Overview:

Msprime is a Python package that simulates ancestral histories and DNA sequence data. Msprime uses backwards-in-time “coalescent” models which allows it to simulate data very efficiently; however, it is not as flexible as forwards-in-time simulators like SLiM or fwdpy11.

Contributors:

@jeromekelleher
@petrelharp
@benjeffery
@DomNelson
@JereKoskela
@grahamgower
@hyanwong
@ashander
@mmatschiner
@fbaumdicker
@shajoezhu
@andrewkern
@gtsambos
@daniel-goldstein
@apragsdale
@castedo
@molpopgen
@gbinux
@agladstein
@nikbaya
@cdquinto
@hugovk
@TPPSellinger
@awohns
@koelling
@GertjanBisschop
@jgallowa07