Tsinfer is a Python package to infer an ARG in tree sequence format
from large quantities of phased DNA sequence data in
VCF Zarr format
(see the usage documentation
for how to convert data from a VCF into a suitable input format).
sample_data = tsinfer.load(
"phased_sequence_data.samples"
)
ts = tsinfer.infer(sample_data)
